Index

_

__init__() (pynetim.algorithms.base_algorithm.BaseAlgorithm method) (pynetim.algorithms.deep_learning.BaseDLAlgorithm method) (pynetim.algorithms.heuristic.BetweennessCentralityAlgorithm method) (pynetim.algorithms.heuristic.ClosenessCentralityAlgorithm method) (pynetim.algorithms.heuristic.DegreeCentralityAlgorithm method) (pynetim.algorithms.heuristic.DegreeDiscountAlgorithm method) (pynetim.algorithms.heuristic.EigenvectorCentralityAlgorithm method) (pynetim.algorithms.heuristic.KShellDecompositionAlgorithm method) (pynetim.algorithms.heuristic.PageRankAlgorithm method) (pynetim.algorithms.heuristic.SingleDiscountAlgorithm method) (pynetim.algorithms.heuristic.VoteRankAlgorithm method) (pynetim.algorithms.ris.BaseRISAlgorithm method) (pynetim.algorithms.ris.IMMAlgorithm method) (pynetim.algorithms.ris.OPIMAlgorithm method) (pynetim.algorithms.ris.OPIMCAlgorithm method) (pynetim.algorithms.ris.TIMAlgorithm method) (pynetim.algorithms.ris.TIMPlusAlgorithm method) (pynetim.algorithms.simulation.CELFAlgorithm method) (pynetim.algorithms.simulation.CELFPlusAlgorithm method) (pynetim.algorithms.simulation.GreedyAlgorithm method) (pynetim.diffusion_model.base_multiprocess_diffusion_model.BaseMultiprocessDiffusionModel method) (pynetim.diffusion_model.BaseMultiprocessDiffusionModel method) (pynetim.diffusion_model.IndependentCascadeModel method) (pynetim.diffusion_model.LinearThresholdModel method) (pynetim.diffusion_model.PyDiffusionModelBase method) (pynetim.diffusion_model.SusceptibleInfectedModel method) (pynetim.diffusion_model.SusceptibleInfectedRecoveredModel method) (pynetim.graph.IMGraph method) (pynetim.timing.AlgorithmTimer method)

A

add_edge() (pynetim.graph.IMGraph method) add_edges() (pynetim.graph.IMGraph method) AlgorithmTimer (class in pynetim.timing)

all_pairs_shortest_path_length() (in module pynetim.utils) all_runtimes (pynetim.timing.AlgorithmTimer property) average_shortest_distance() (in module pynetim.evaluation)

B

BaseAlgorithm (class in pynetim.algorithms.base_algorithm) BaseCallbackDiffusionModel (class in pynetim.diffusion_model) (class in pynetim.diffusion_model.base_callback_diffusion_model) BaseDLAlgorithm (class in pynetim.algorithms.deep_learning) BaseMultiprocessDiffusionModel (class in pynetim.diffusion_model) (class in pynetim.diffusion_model.base_multiprocess_diffusion_model) BaseRISAlgorithm (class in pynetim.algorithms.ris)

batch_degree() (pynetim.graph.IMGraph method) batch_get_edge_weight() (pynetim.graph.IMGraph method) batch_in_degree() (pynetim.graph.IMGraph method) batch_out_degree() (pynetim.graph.IMGraph method) batch_out_neighbors() (pynetim.graph.IMGraph method) batch_out_neighbors_with_weights() (pynetim.graph.IMGraph method) BetweennessCentralityAlgorithm (class in pynetim.algorithms.heuristic)

C

CELFAlgorithm (class in pynetim.algorithms.simulation) CELFPlusAlgorithm (class in pynetim.algorithms.simulation) clear() (pynetim.timing.AlgorithmTimer method) ClosenessCentralityAlgorithm (class in pynetim.algorithms.heuristic)

clustering_coefficient() (in module pynetim.evaluation) compare_algorithms_runtime() (in module pynetim.timing) compute_k_shell_values() (in module pynetim.graph) (pynetim.algorithms.heuristic.KShellDecompositionAlgorithm static method) compute_sir_beta() (in module pynetim.utils)

D

degree() (pynetim.graph.IMGraph method) degree_distribution() (in module pynetim.evaluation) degree_statistics() (in module pynetim.evaluation) DegreeCentralityAlgorithm (class in pynetim.algorithms.heuristic) DegreeDiscountAlgorithm (class in pynetim.algorithms.heuristic) device (pynetim.algorithms.deep_learning.BaseDLAlgorithm attribute)

diffusion_model (pynetim.algorithms.base_algorithm.BaseAlgorithm attribute) (pynetim.algorithms.simulation.CELFAlgorithm attribute) (pynetim.algorithms.simulation.CELFPlusAlgorithm attribute) (pynetim.algorithms.simulation.GreedyAlgorithm attribute) directed (pynetim.graph.IMGraph property) distribution_entropy() (in module pynetim.evaluation)

E

edges (pynetim.graph.IMGraph property)

EigenvectorCentralityAlgorithm (class in pynetim.algorithms.heuristic)

G

generate_ba_graph() (in module pynetim.graph) (in module pynetim.utils) generate_er_graph() (in module pynetim.graph) (in module pynetim.utils) generate_rr_sets() (in module pynetim.utils) generate_ws_graph() (in module pynetim.graph) (in module pynetim.utils) get_activated_nodes() (pynetim.diffusion_model.IndependentCascadeModel method) (pynetim.diffusion_model.LinearThresholdModel method) (pynetim.diffusion_model.PyDiffusionModelBase method) (pynetim.diffusion_model.SusceptibleInfectedModel method) (pynetim.diffusion_model.SusceptibleInfectedRecoveredModel method) get_activation_frequency() (pynetim.diffusion_model.IndependentCascadeModel method) (pynetim.diffusion_model.LinearThresholdModel method) (pynetim.diffusion_model.PyDiffusionModelBase method) (pynetim.diffusion_model.SusceptibleInfectedModel method) (pynetim.diffusion_model.SusceptibleInfectedRecoveredModel method) get_adj_list() (pynetim.graph.IMGraph method) get_adj_list_py() (pynetim.graph.IMGraph method) get_adj_matrix() (pynetim.graph.IMGraph method) get_adj_matrix_sparse() (pynetim.graph.IMGraph method) get_all_degrees() (pynetim.graph.IMGraph method) get_all_in_degrees() (pynetim.graph.IMGraph method) get_all_out_degrees() (pynetim.graph.IMGraph method) get_approximation() (pynetim.algorithms.ris.OPIMAlgorithm method) (pynetim.algorithms.ris.OPIMCAlgorithm method) get_edge_weight() (pynetim.graph.IMGraph method) get_influence() (pynetim.algorithms.ris.OPIMAlgorithm method) (pynetim.algorithms.ris.OPIMCAlgorithm method) get_py_override() (pynetim.diffusion_model.PyDiffusionModelBase method) get_seeds() (pynetim.algorithms.base_algorithm.BaseAlgorithm method) (pynetim.algorithms.deep_learning.BaseDLAlgorithm method) (pynetim.algorithms.heuristic.BetweennessCentralityAlgorithm method) (pynetim.algorithms.heuristic.ClosenessCentralityAlgorithm method) (pynetim.algorithms.heuristic.DegreeCentralityAlgorithm method) (pynetim.algorithms.heuristic.DegreeDiscountAlgorithm method) (pynetim.algorithms.heuristic.EigenvectorCentralityAlgorithm method) (pynetim.algorithms.heuristic.KShellDecompositionAlgorithm method) (pynetim.algorithms.heuristic.PageRankAlgorithm method) (pynetim.algorithms.heuristic.SingleDiscountAlgorithm method) (pynetim.algorithms.heuristic.VoteRankAlgorithm method) (pynetim.algorithms.ris.BaseRISAlgorithm method) (pynetim.algorithms.ris.IMMAlgorithm method) (pynetim.algorithms.ris.OPIMAlgorithm method) (pynetim.algorithms.ris.OPIMCAlgorithm method) (pynetim.algorithms.ris.TIMAlgorithm method) (pynetim.algorithms.ris.TIMPlusAlgorithm method) (pynetim.algorithms.simulation.CELFAlgorithm method) (pynetim.algorithms.simulation.CELFPlusAlgorithm method) (pynetim.algorithms.simulation.GreedyAlgorithm method)

graph (pynetim.algorithms.base_algorithm.BaseAlgorithm attribute) (pynetim.algorithms.heuristic.BetweennessCentralityAlgorithm attribute) (pynetim.algorithms.heuristic.ClosenessCentralityAlgorithm attribute) (pynetim.algorithms.heuristic.DegreeCentralityAlgorithm attribute) (pynetim.algorithms.heuristic.DegreeDiscountAlgorithm attribute) (pynetim.algorithms.heuristic.EigenvectorCentralityAlgorithm attribute) (pynetim.algorithms.heuristic.KShellDecompositionAlgorithm attribute) (pynetim.algorithms.heuristic.PageRankAlgorithm attribute) (pynetim.algorithms.heuristic.SingleDiscountAlgorithm attribute) (pynetim.algorithms.heuristic.VoteRankAlgorithm attribute) (pynetim.algorithms.simulation.CELFAlgorithm attribute) (pynetim.algorithms.simulation.CELFPlusAlgorithm attribute) (pynetim.algorithms.simulation.GreedyAlgorithm attribute) (pynetim.diffusion_model.base_callback_diffusion_model.BaseCallbackDiffusionModel attribute) (pynetim.diffusion_model.base_multiprocess_diffusion_model.BaseMultiprocessDiffusionModel attribute) (pynetim.diffusion_model.BaseCallbackDiffusionModel attribute) (pynetim.diffusion_model.BaseMultiprocessDiffusionModel attribute) (pynetim.diffusion_model.PyDiffusionModelBase property) GreedyAlgorithm (class in pynetim.algorithms.simulation)

H

has_edge() (pynetim.graph.IMGraph method)

I

IMGraph (class in pynetim.graph) IMMAlgorithm (class in pynetim.algorithms.ris) in_degree() (pynetim.graph.IMGraph method)

in_neighbors() (pynetim.graph.IMGraph method) IndependentCascadeModel (class in pynetim.diffusion_model) internal_to_original (pynetim.graph.IMGraph property)

K

kendall_tau() (in module pynetim.evaluation)

KShellDecompositionAlgorithm (class in pynetim.algorithms.heuristic)

L

last_runtime (pynetim.timing.AlgorithmTimer property) LinearThresholdModel (class in pynetim.diffusion_model)

load_edgelist() (in module pynetim.utils) local_clustering() (in module pynetim.evaluation)

M

mean_centrality() (in module pynetim.evaluation) measure_runtime() (in module pynetim.timing) measure_runtime_multiple_runs() (in module pynetim.timing) measure_time() (in module pynetim.timing) model (pynetim.algorithms.deep_learning.BaseDLAlgorithm attribute) module pynetim.algorithms.base_algorithm pynetim.algorithms.deep_learning pynetim.algorithms.heuristic pynetim.algorithms.ris pynetim.algorithms.simulation pynetim.diffusion_model pynetim.diffusion_model.base_callback_diffusion_model pynetim.diffusion_model.base_multiprocess_diffusion_model pynetim.evaluation pynetim.graph pynetim.timing pynetim.utils

monotonicity_score() (in module pynetim.evaluation)

N

neighbor_coverage() (in module pynetim.evaluation) num_edges (pynetim.graph.IMGraph property) num_nodes (pynetim.diffusion_model.base_callback_diffusion_model.BaseCallbackDiffusionModel attribute) (pynetim.diffusion_model.base_multiprocess_diffusion_model.BaseMultiprocessDiffusionModel attribute) (pynetim.diffusion_model.BaseCallbackDiffusionModel attribute) (pynetim.diffusion_model.BaseMultiprocessDiffusionModel attribute) (pynetim.graph.IMGraph property)

O

OPIMAlgorithm (class in pynetim.algorithms.ris) OPIMCAlgorithm (class in pynetim.algorithms.ris) original_to_internal (pynetim.graph.IMGraph property)

out_degree() (pynetim.graph.IMGraph method) out_neighbors() (pynetim.graph.IMGraph method) out_neighbors_arrays() (pynetim.graph.IMGraph method) out_neighbors_with_weights() (pynetim.graph.IMGraph method)

P

PageRankAlgorithm (class in pynetim.algorithms.heuristic) PyDiffusionModelBase (class in pynetim.diffusion_model) pynetim.algorithms.base_algorithm module pynetim.algorithms.deep_learning module pynetim.algorithms.heuristic module pynetim.algorithms.ris module pynetim.algorithms.simulation module pynetim.diffusion_model module

pynetim.diffusion_model.base_callback_diffusion_model module pynetim.diffusion_model.base_multiprocess_diffusion_model module pynetim.evaluation module pynetim.graph module pynetim.timing module pynetim.utils module

R

ranking_distance() (in module pynetim.evaluation) ranking_stability() (in module pynetim.evaluation) reachability() (in module pynetim.evaluation) remove_edge() (pynetim.graph.IMGraph method) remove_edges() (pynetim.graph.IMGraph method) renumber_edges() (in module pynetim.utils) run() (pynetim.algorithms.base_algorithm.BaseAlgorithm method) (pynetim.algorithms.deep_learning.BaseDLAlgorithm method) (pynetim.algorithms.heuristic.BetweennessCentralityAlgorithm method) (pynetim.algorithms.heuristic.ClosenessCentralityAlgorithm method) (pynetim.algorithms.heuristic.DegreeCentralityAlgorithm method) (pynetim.algorithms.heuristic.DegreeDiscountAlgorithm method) (pynetim.algorithms.heuristic.EigenvectorCentralityAlgorithm method) (pynetim.algorithms.heuristic.KShellDecompositionAlgorithm method) (pynetim.algorithms.heuristic.PageRankAlgorithm method) (pynetim.algorithms.heuristic.SingleDiscountAlgorithm method) (pynetim.algorithms.heuristic.VoteRankAlgorithm method) (pynetim.algorithms.ris.BaseRISAlgorithm method) (pynetim.algorithms.ris.IMMAlgorithm method) (pynetim.algorithms.ris.OPIMAlgorithm method) (pynetim.algorithms.ris.OPIMCAlgorithm method) (pynetim.algorithms.ris.TIMAlgorithm method) (pynetim.algorithms.ris.TIMPlusAlgorithm method) (pynetim.algorithms.simulation.CELFAlgorithm method) (pynetim.algorithms.simulation.CELFPlusAlgorithm method) (pynetim.algorithms.simulation.GreedyAlgorithm method) (pynetim.timing.AlgorithmTimer method)

run_monte_carlo_diffusion() (pynetim.diffusion_model.base_multiprocess_diffusion_model.BaseMultiprocessDiffusionModel method) (pynetim.diffusion_model.BaseMultiprocessDiffusionModel method) (pynetim.diffusion_model.IndependentCascadeModel method) (pynetim.diffusion_model.LinearThresholdModel method) (pynetim.diffusion_model.PyDiffusionModelBase method) (pynetim.diffusion_model.SusceptibleInfectedModel method) (pynetim.diffusion_model.SusceptibleInfectedRecoveredModel method) run_monte_carlo_with_frequency() (pynetim.diffusion_model.base_multiprocess_diffusion_model.BaseMultiprocessDiffusionModel method) (pynetim.diffusion_model.BaseMultiprocessDiffusionModel method) run_multiple() (pynetim.timing.AlgorithmTimer method) run_single_simulation() (pynetim.diffusion_model.IndependentCascadeModel method) (pynetim.diffusion_model.LinearThresholdModel method) (pynetim.diffusion_model.PyDiffusionModelBase method) (pynetim.diffusion_model.SusceptibleInfectedModel method) (pynetim.diffusion_model.SusceptibleInfectedRecoveredModel method) run_single_trial() (pynetim.diffusion_model.base_callback_diffusion_model.BaseCallbackDiffusionModel method) (pynetim.diffusion_model.base_multiprocess_diffusion_model.BaseMultiprocessDiffusionModel method) (pynetim.diffusion_model.BaseCallbackDiffusionModel method) (pynetim.diffusion_model.BaseMultiprocessDiffusionModel method)

S

sample_rr_set_ic() (in module pynetim.utils) sample_rr_set_lt() (in module pynetim.utils) save_edgelist() (in module pynetim.utils) seed_diversity() (in module pynetim.evaluation) seed_overlap() (in module pynetim.evaluation) seeds (pynetim.algorithms.base_algorithm.BaseAlgorithm attribute) (pynetim.algorithms.heuristic.BetweennessCentralityAlgorithm attribute) (pynetim.algorithms.heuristic.ClosenessCentralityAlgorithm attribute) (pynetim.algorithms.heuristic.DegreeCentralityAlgorithm attribute) (pynetim.algorithms.heuristic.DegreeDiscountAlgorithm attribute) (pynetim.algorithms.heuristic.EigenvectorCentralityAlgorithm attribute) (pynetim.algorithms.heuristic.KShellDecompositionAlgorithm attribute) (pynetim.algorithms.heuristic.PageRankAlgorithm attribute) (pynetim.algorithms.heuristic.SingleDiscountAlgorithm attribute) (pynetim.algorithms.heuristic.VoteRankAlgorithm attribute) (pynetim.algorithms.simulation.CELFAlgorithm attribute) (pynetim.algorithms.simulation.CELFPlusAlgorithm attribute) (pynetim.algorithms.simulation.GreedyAlgorithm attribute) (pynetim.diffusion_model.base_callback_diffusion_model.BaseCallbackDiffusionModel attribute) (pynetim.diffusion_model.base_multiprocess_diffusion_model.BaseMultiprocessDiffusionModel attribute) (pynetim.diffusion_model.BaseCallbackDiffusionModel attribute) (pynetim.diffusion_model.BaseMultiprocessDiffusionModel attribute) set_beta() (pynetim.diffusion_model.SusceptibleInfectedModel method) (pynetim.diffusion_model.SusceptibleInfectedRecoveredModel method) set_const_weights() (in module pynetim.graph) set_edge_weights() (in module pynetim.graph) set_edge_weights_dict() (in module pynetim.graph)

set_gamma() (pynetim.diffusion_model.SusceptibleInfectedRecoveredModel method) set_max_steps() (pynetim.diffusion_model.SusceptibleInfectedModel method) set_py_override() (pynetim.diffusion_model.PyDiffusionModelBase method) set_record_activated() (pynetim.diffusion_model.IndependentCascadeModel method) (pynetim.diffusion_model.LinearThresholdModel method) (pynetim.diffusion_model.PyDiffusionModelBase method) (pynetim.diffusion_model.SusceptibleInfectedModel method) (pynetim.diffusion_model.SusceptibleInfectedRecoveredModel method) set_record_activation_frequency() (pynetim.diffusion_model.IndependentCascadeModel method) (pynetim.diffusion_model.LinearThresholdModel method) (pynetim.diffusion_model.PyDiffusionModelBase method) (pynetim.diffusion_model.SusceptibleInfectedModel method) (pynetim.diffusion_model.SusceptibleInfectedRecoveredModel method) set_seeds() (pynetim.diffusion_model.base_multiprocess_diffusion_model.BaseMultiprocessDiffusionModel method) (pynetim.diffusion_model.BaseMultiprocessDiffusionModel method) (pynetim.diffusion_model.IndependentCascadeModel method) (pynetim.diffusion_model.LinearThresholdModel method) (pynetim.diffusion_model.PyDiffusionModelBase method) (pynetim.diffusion_model.SusceptibleInfectedModel method) (pynetim.diffusion_model.SusceptibleInfectedRecoveredModel method) set_tv_weights() (in module pynetim.graph) set_uniform_weights() (in module pynetim.graph) set_wc_weights() (in module pynetim.graph) shortest_path_length() (in module pynetim.utils) SingleDiscountAlgorithm (class in pynetim.algorithms.heuristic) spearman_correlation() (in module pynetim.evaluation) SusceptibleInfectedModel (class in pynetim.diffusion_model) SusceptibleInfectedRecoveredModel (class in pynetim.diffusion_model)

T

TIMAlgorithm (class in pynetim.algorithms.ris) TIMPlusAlgorithm (class in pynetim.algorithms.ris) to_igraph() (in module pynetim.utils) to_networkx() (in module pynetim.utils)

to_pyg() (in module pynetim.utils) to_scipy_sparse() (in module pynetim.utils) top_k_accuracy() (in module pynetim.evaluation) top_k_overlap() (in module pynetim.evaluation)

U

update_edge_weight() (pynetim.graph.IMGraph method)

V

VoteRankAlgorithm (class in pynetim.algorithms.heuristic)

W

weight_statistics() (in module pynetim.evaluation)